miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159635787|gb|EG387424.1|EG387424 GCATTTTTTTTTTTTTTTTTTGTCAAAGGTGCCCAAATATGAGGGAAACCTAAAATTGAACCATTGCCACATCACAGAAA
AACAATTAGCACACGGCGCATCTCATCGACACGCAAAAACACGGTCAGTCGACACACGGCACAGCACGACCGATGTGAAG
CGTCACCAATCGGAACCGGATCCTCTGCAGTACTGCCCTCTGACTTTGGGCAGCTGACATGTGGGCCACCATGCTAGCGG
GCCCACATGTCAGCCACAGAGTCCCTCTGCAGTATTGCAGGGAAGGCTCGTCGCACCAATCAGCATATGAAGGCAACATC
AGCATGCTCGTCACTGCAGTAGAGGCCAGGCTGCTGGACGTACCCCTGCTTGGACAGCAGCCCGCGCGCCCTTCGCACGA
GTTCCCTGTTGGTCACCTTCCCGCGCTTCTCCTCCGCGAGGACCGCCTGGATGGCGTTGCTGAGCGCGCCGTAGGACACG
CCGCTGGCCGTGGTCAAGTCGGCCGAGGACTCGTCGGTCTGGCACCCGCTGATCAGGACGCCGTTGCGTGGCGGCGACAC
CTTCGCCGCGGCACCTGCGTACACCTCCTCGACGCTCCGCACCTCCTGCTCCATGGCTGGTCCGAGCGCGTCCGCCAGAT
CCCCGCCTCGGCCGCCGTCCGGCTTAGCCTTCGGGATCATCTCTGTGACCGTGGCGGCCTGATCAGGGCCATGCGGGAGC
TTGCCGCCCACCATGGCATTGACGAACTTCTTGATCTTGGGCGTGGCGT




Most similar to sp|O64517|MCA4_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O64517|MCA4_ARATH Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4
           PE=1 SV=1
          Length = 418

 Score =  118 bits (296), Expect = 4e-26
 Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
 Frame = -3

Query: 767 ATPKIKKFVNAMVGGKLPHGPDQAATVTEMIPK-AKXXXXXXXXXXXXXXXAMEQEVRSV 591
           ++PK+KKF+  ++G KL  G  +   +  M+ K A                AM+  V S 
Sbjct: 262 SSPKVKKFMKVILG-KLQAGNGEEGGLMGMLGKLASGFLEGKLNDEDYVKPAMQTHVGSK 320

Query: 590 EEVYAGAAAKVSP-PRNGVLISGCQTDESSADLTTASGVS--YGALSNAIQAVLAEEKRG 420
           EEVYAG +    P P +G+LISGCQTD++SAD T A   +  YGA+SN+IQ +L EE  G
Sbjct: 321 EEVYAGGSRGSVPLPDSGILISGCQTDQTSADATPAGKPTEAYGAMSNSIQTIL-EETDG 379

Query: 419 KVTNRELVRRARGLLSKQGYVQQPGLYCSDEHADVAFIC 303
           +++NRE+V RAR  L KQG+ QQPGLYC D +A+  FIC
Sbjct: 380 EISNREMVTRARKALKKQGFTQQPGLYCHDGYANAPFIC 418